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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 395ATAC-seq
  • 85snATAC-seq
  • 3DNase-seq
Assay category
  • 516Transcription
  • 483DNA accessibility
  • 481DNA binding
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Date released
  • 102February, 2023
  • 80August, 2021
  • 79May, 2022
  • 55May, 2020
  • 48February, 2021
  • 29May, 2021
  • 26November, 2019
  • 19October, 2019
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 4March, 2019
  • 1August, 2017
  • 1August, 2022
  • 1July, 2025
  • 1November, 2020
Available data
  • 492bed narrowPeak
  • 389bam
  • bigWig
  • 241bigBed narrowPeak
  • 210bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 15tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
  • 1tbi
Organism
  • 481Homo sapiens
Biosample type
  • 247tissue
  • 180primary cell
  • 30in vitro differentiated cells
  • 26cell line
Organ
  • 122pancreas
  • 83kidney
  • 71epithelium
  • 43artery
  • 43blood vessel
  • 43heart
  • 43vasculature
  • 28eye
  • 16connective tissue
  • 12bone element
  • 12skeleton
  • 10lung
  • 8blood
  • 8bodily fluid
  • 6limb
  • 3liver
  • 2adipose tissue
  • 2brain
  • 2musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 357AMP
  • 87HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 184GRCh38
  • 138hg19
Lab
  • 253AMP-T2D consortium
  • 87Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 47Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 35inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

483 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney756
islet of Langerhans657
coronary artery35
retina15
pigmented layer of retina12
lung10
pancreas4
skeletal muscle tissue2
acetabular part of hip bone1
adipose tissue1
adipose tissue(adipose white tissue)1
brain1
distal epiphysis1
distal epiphysis of femur1
distal epiphysis of humerus1
distal epiphysis of tibia1
ilium1
ischium1
proximal epiphysis1
proximal epiphysis of femur1
proximal epiphysis of humerus1
proximal epiphysis of tibia1
pubis1
right lobe of liver1
primary cell
Langerhans cell48
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
monocyte13
pancreatic beta cell13
macrophage11
peripheral blood mononuclear cell8
pancreatic acinar cell4
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
kidney glomerular epithelial cell1
kidney tubule cell1
osteoblast1
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte5
chondrocyte5
immature adipocyte2
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
preadipocyte1
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
HepG21
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