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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 395ATAC-seq
  • 84snATAC-seq
  • 3DNase-seq
Assay category
  • 516Transcription
  • 482DNA accessibility
  • 481DNA binding
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Date released
  • 102February, 2023
  • 80August, 2021
  • 79May, 2022
  • 55May, 2020
  • 48February, 2021
  • 29May, 2021
  • 26November, 2019
  • 19October, 2019
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 4March, 2019
  • 1August, 2017
  • 1August, 2022
  • 1November, 2020
Available data
  • 492bed narrowPeak
  • 389bam
  • bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 481Homo sapiens
Biosample type
  • 246tissue
  • 180primary cell
  • 30in vitro differentiated cells
  • 26cell line
Organ
  • 122pancreas
  • 83kidney
  • 71epithelium
  • 43artery
  • 43blood vessel
  • 43heart
  • 43vasculature
  • 28eye
  • 16connective tissue
  • 12bone element
  • 12skeleton
  • 10lung
  • 8blood
  • 8bodily fluid
  • 6limb
  • 3liver
  • 2adipose tissue
  • 2brain
  • 1musculature of body
  • 1pituitary gland
  • 1skin of body
Project
  • 356AMP
  • 87HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 183GRCh38
  • 138hg19
Lab
  • 253AMP-T2D consortium
  • 87Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 47Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
Audit category:
  • 35inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

482 results

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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney756
islet of Langerhans657
coronary artery35
retina15
pigmented layer of retina12
primary cell
Langerhans cell48
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
pancreatic alpha cell22
monocyte13
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte5
chondrocyte5
immature adipocyte2
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
HepG21
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