Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ATAC-seq
189
DNase-seq
57
snATAC-seq
2
FAIRE-seq
Assay category
918
DNA binding
658
DNA accessibility
240
Transcription
73
DNA methylation
28
3D chromatin structure
1
DNA sequencing
Date released
180
June, 2019
100
May, 2020
82
August, 2021
81
May, 2022
58
February, 2023
34
May, 2021
27
October, 2019
26
November, 2019
16
January, 2021
14
February, 2021
11
May, 2023
10
April, 2020
6
July, 2019
3
January, 2018
3
March, 2019
2
August, 2017
2
March, 2020
2
November, 2020
1
August, 2022
Available data
434
bed narrowPeak
366
bam
335
bigWig
229
bigBed narrowPeak
198
bed bed3+
197
bed broadPeak
195
bigBed broadPeak
fastq
64
xls
60
zippedFastqFolder
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
657
Homo sapiens
Biosample type
385
tissue
209
primary cell
42
in vitro differentiated cells
22
cell line
Organ
163
kidney
110
pancreas
90
epithelium
77
heart
vasculature
56
blood vessel
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
559
AMP
60
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
366
hg19
331
GRCh38
Lab
445
AMP-T2D consortium
81
Katalin Susztak, Upenn
60
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
38
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.file_type!
fastq
tsv
organ_slims!
vasculature
BIOSAMPLE
ASSAY
658 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
47
7
liver
20
heart
18
retina
15
3
+ See 54 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic alpha cell
22
Langerhans cell
21
monocyte
15
+ See 48 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
18
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
Download