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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
23
DNase-seq
11
snATAC-seq
Assay category
226
Transcription
130
DNA accessibility
71
DNA binding
43
DNA methylation
9
3D chromatin structure
Date released
39
May, 2022
22
June, 2019
20
November, 2019
16
May, 2021
13
February, 2023
8
January, 2021
4
March, 2020
4
October, 2019
3
March, 2019
1
August, 2022
Available data
93
bam
92
bed narrowPeak
69
bigWig
fastq
50
bigBed narrowPeak
39
zippedFastqFolder
27
bed broadPeak
25
bed bed3+
25
bigBed broadPeak
2
tsv
Organism
130
Homo sapiens
Biosample type
71
tissue
39
primary cell
20
cell line
Organ
163
kidney
112
pancreas
91
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
musculature of body
34
brain
32
eye
30
connective tissue
25
liver
18
ureter
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
70
AMP
39
HPAP
21
T1D
Genome assembly (visualization)
47
hg19
45
GRCh38
Lab
67
AMP-T2D consortium
39
Klaus Kaestner, Upenn
21
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
1
audit script error
files.file_type!
fastq
organ_slims!
bone element
BIOSAMPLE
ASSAY
130 results
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ATAC-seq
DNase-seq
snATAC-seq
tissue
islet of Langerhans
38
7
renal pelvis
10
pancreas
2
4
left renal pelvis
4
right renal pelvis
4
+ See 1 more…
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
cell line
EndoC_BH1
19
Panc1
1
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