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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ATAC-seq
11
snATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
459
Transcription
205
DNA binding
153
DNA accessibility
53
DNA methylation
7
3D chromatin structure
Date released
57
May, 2022
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
4
October, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
61
fastq
55
bam
54
bed narrowPeak
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
153
Homo sapiens
Biosample type
71
primary cell
63
tissue
19
cell line
Organ
163
kidney
153
pancreas
121
epithelium
77
heart
57
vasculature
55
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
33
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
2
spleen
2
vein
1
pituitary gland
1
skin of body
Project
83
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
59
hg19
47
GRCh38
Lab
60
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
18
inconsistent ontology term
1
audit script error
files.file_type!
tar
vcf
month_released!
November, 2019
BIOSAMPLE
ASSAY
153 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
39
7
1
1
body of pancreas
4
4
pancreas
4
2
1
cell line
EndoC_BH1
18
Panc1
1
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