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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ATAC-seq
11
snATAC-seq
6
DNase-seq
1
FAIRE-seq
Assay category
218
DNA binding
168
DNA accessibility
71
Transcription
43
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
October, 2019
November, 2018
3
September, 2020
2
March, 2020
1
August, 2022
Available data
72
bam
71
bed narrowPeak
58
fastq
48
bigWig
39
zippedFastqFolder
29
bigBed narrowPeak
7
bed broadPeak
5
bed bed3+
5
bigBed broadPeak
tsv
Organism
168
Homo sapiens
Biosample type
78
tissue
71
primary cell
19
cell line
Organ
168
pancreas
163
kidney
122
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
brain
35
musculature of body
33
connective tissue
32
eye
26
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
1
spleen
Project
98
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
74
hg19
65
GRCh38
Lab
75
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
18
inconsistent ontology term
1
audit script error
files.file_type!
tsv
month_released!
November, 2018
BIOSAMPLE
ASSAY
168 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
57
7
1
1
body of pancreas
4
2
pancreas
4
2
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
18
Panc1
1
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