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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
19
DNase-seq
1
FAIRE-seq
Assay category
201
Transcription
129
DNA binding
84
DNA accessibility
12
DNA methylation
8
3D chromatin structure
Date released
16
May, 2021
14
June, 2019
14
September, 2018
12
February, 2023
7
August, 2020
7
October, 2019
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
54
bed narrowPeak
52
bigWig
42
bam
40
bigBed narrowPeak
zippedFastqFolder
32
fastq
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
1
tar
1
tsv
Organism
84
Homo sapiens
Biosample type
52
primary cell
20
cell line
12
tissue
Organ
163
kidney
134
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
74
AMP
10
HPAP
Genome assembly (visualization)
51
GRCh38
50
hg19
Lab
74
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
files.file_type!
zippedFastqFolder
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
+ See 13 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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