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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 209DNase-seq
  • 175ATAC-seq
  • 5FAIRE-seq
Assay category
  • 1578DNA binding
  • 1406Transcription
  • 389DNA accessibility
  • 18DNA methylation
Date released
  • 187June, 2019
  • 45May, 2020
  • 26November, 2019
  • 18February, 2021
  • 18May, 2022
  • 15October, 2019
  • 14September, 2018
  • 13May, 2021
  • 10August, 2017
  • 10August, 2021
  • 10November, 2018
  • 8July, 2019
  • 7October, 2017
  • 5September, 2017
  • 2November, 2020
  • 1March, 2019
Available data
  • 492bed narrowPeak
  • 389bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 389Homo sapiens
Biosample type
  • 245tissue
  • 114primary cell
  • 18in vitro differentiated cells
  • 12cell line
Organ
  • 80kidney
  • 75pancreas
  • 44limb
  • 42epithelium
  • 42heart
  • 35brain
  • 33musculature of body
  • 23vasculature
  • 21blood vessel
  • 18ureter
  • 14artery
  • 14connective tissue
  • 8bone element
  • 8liver
  • 8skeleton
  • 5adipose tissue
  • 4eye
  • 3nerve
  • 3vein
  • 2spleen
Project
  • 389AMP
Genome assembly (visualization)
  • 363hg19
  • 318GRCh38
Lab
  • 370AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 19inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

389 results

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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans1381
heart18
muscle of arm17
brain14
kidney131
primary cell
monocyte15
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
in vitro differentiated cells
neural progenitor cell10
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte1
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
smooth muscle cell of the coronary artery8
EndoC_BH11
HepG21
Panc11
glomerular visceral epithelial cell1
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