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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ATAC-seq
1
snATAC-seq
Assay category
546
DNA binding
259
DNA accessibility
5
3D chromatin structure
2
Transcription
Date released
76
August, 2021
69
February, 2023
39
May, 2022
26
November, 2019
18
February, 2021
13
May, 2021
6
October, 2017
6
October, 2019
5
July, 2019
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
259
Homo sapiens
Biosample type
207
tissue
25
in vitro differentiated cells
17
primary cell
10
cell line
Organ
64
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
42
pancreas
27
eye
22
liver
14
epithelium
11
connective tissue
8
bone element
8
limb
8
skeleton
3
adipose tissue
1
musculature of body
1
nerve
1
spleen
Project
259
AMP
Genome assembly (visualization)
184
GRCh38
160
hg19
Lab
153
AMP-T2D consortium
64
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
14
inconsistent ontology term
1
audit script error
1
inconsistent replicate
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
259 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
kidney
64
islet of Langerhans
37
coronary artery
36
liver
20
retina
15
+ See 20 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
2
immature adipocyte
2
cardiac precursors (cardiac muscle cell)
1
+ See 5 more…
primary cell
monocyte
13
osteoblast
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
See all biosamples
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