Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 204DNase-seq
  • 4ATAC-seq
  • 1snATAC-seq
Assay category
  • 209DNA accessibility
  • 53DNA binding
  • 53D chromatin structure
  • 2Transcription
Date released
  • 187June, 2019
  • 9November, 2018
  • 7October, 2019
  • 4February, 2023
  • 1May, 2022
  • 1November, 2020
Available data
  • 492bed narrowPeak
  • 389bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 209Homo sapiens
Biosample type
  • 177tissue
  • 27primary cell
  • 4in vitro differentiated cells
  • 1cell line
Organ
  • 78kidney
  • 36limb
  • 34musculature of body
  • 32brain
  • 30heart
  • 18ureter
  • 16epithelium
  • 12connective tissue
  • 11vasculature
  • 9blood vessel
  • 7pancreas
  • 5liver
  • 4artery
  • 4eye
  • 2adipose tissue
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 209AMP
Genome assembly (visualization)
  • 204GRCh38
  • 186hg19
Lab
  • 209AMP-T2D consortium
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

209 results

search-icontable-tab-icon
Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
primary cell
cardiac fibroblast3
endothelial cell of umbilical vein2
glomerular visceral epithelial cell2
kidney tubule cell2
astrocyte of the cerebellum1
in vitro differentiated cells
immature adipocyte2
adipocyte1
preadipocyte1
cell line
Panc11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego