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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
DNase-seq
64
ATAC-seq
27
snATAC-seq
5
FAIRE-seq
Assay category
1170
DNA binding
371
Transcription
305
DNA accessibility
24
3D chromatin structure
21
DNA methylation
Date released
187
June, 2019
27
February, 2021
18
May, 2022
14
September, 2018
12
October, 2019
10
August, 2017
10
November, 2018
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
2
July, 2019
1
March, 2019
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
0
hic
Organism
305
Homo sapiens
Biosample type
211
tissue
89
primary cell
3
in vitro differentiated cells
2
cell line
Organ
80
kidney
66
pancreas
50
epithelium
36
limb
34
brain
33
musculature of body
30
heart
18
ureter
14
connective tissue
12
vasculature
10
blood vessel
6
liver
5
adipose tissue
4
artery
4
eye
3
vein
2
nerve
2
spleen
Project
268
AMP
37
HPAP
Genome assembly (visualization)
249
GRCh38
243
hg19
Lab
248
AMP-T2D consortium
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
4
inconsistent ontology term
BIOSAMPLE
ASSAY
305 results
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Clear Filters
DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
1
20
1
heart
18
muscle of arm
17
brain
14
kidney
13
1
+ See 42 more…
primary cell
Langerhans cell
27
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 23 more…
in vitro differentiated cells
adipocyte
1
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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