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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ATAC-seq
8
DNase-seq
2
FAIRE-seq
Assay category
406
Transcription
161
DNA binding
51
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
14
September, 2018
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2020
3
November, 2018
3
September, 2020
1
October, 2019
Available data
75
bam
74
bed narrowPeak
61
fastq
51
bigWig
39
zippedFastqFolder
32
bigBed narrowPeak
9
bed broadPeak
7
bed bed3+
7
bigBed broadPeak
2
tsv
Organism
51
Homo sapiens
Biosample type
32
primary cell
16
tissue
3
cell line
Organ
80
kidney
52
epithelium
51
pancreas
38
limb
35
brain
34
heart
34
musculature of body
26
liver
18
ureter
17
connective tissue
15
vasculature
13
blood vessel
6
adipose tissue
6
artery
4
eye
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
Project
41
AMP
10
HPAP
Genome assembly (visualization)
45
GRCh38
39
hg19
Lab
40
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
4
4
islet of Langerhans
3
1
1
pancreas
2
1
cell line
EndoC_BH1
2
Panc1
1
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