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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 209DNase-seq
  • 136ATAC-seq
  • 5FAIRE-seq
Assay category
  • 1402Transcription
  • 1390DNA binding
  • 350DNA accessibility
  • 17DNA methylation
  • 53D chromatin structure
Date released
  • 187June, 2019
  • 45May, 2020
  • 20May, 2022
  • 14October, 2019
  • 14September, 2018
  • 10August, 2017
  • 10November, 2018
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5May, 2021
  • 5September, 2017
  • 4March, 2020
  • 3February, 2023
  • 3January, 2018
  • 3September, 2020
  • 2August, 2021
  • 1February, 2021
  • 1November, 2020
Available data
  • 492bed narrowPeak
  • 389bam
  • 350bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 350Homo sapiens
Biosample type
  • 224tissue
  • 108primary cell
  • 13in vitro differentiated cells
  • 5cell line
Organ
  • 80kidney
  • 52epithelium
  • 51pancreas
  • 38limb
  • 35brain
  • 34heart
  • 34musculature of body
  • 26liver
  • 18connective tissue
  • 18ureter
  • 15vasculature
  • 13blood vessel
  • 6adipose tissue
  • 6artery
  • 4eye
  • 3nerve
  • 3vein
  • 2spleen
  • 1blood
  • 1bodily fluid
Project
  • 340AMP
  • 10HPAP
Genome assembly (visualization)
  • 315hg19
  • 258GRCh38
Lab
  • 309AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 10Klaus Kaestner, Upenn
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 11inconsistent ontology term
BIOSAMPLE
ASSAY

350 results

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Clear Filters
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver220
heart18
muscle of arm17
brain14
kidney131
primary cell
pancreatic alpha cell13
pancreatic beta cell10
pancreatic acinar cell5
pancreatic ductal cell4
cardiac fibroblast3
in vitro differentiated cells
embryonic stem cell6
adipocyte13
Progenitor cell of Hypothalamus (neural progenitor cell)1
neuron cell of Hypothalamus (neuron)1
osteoblast1
cell line
EndoC_BH12
GM128781
Panc11
glomerular visceral epithelial cell1
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