Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ATAC-seq
48
snATAC-seq
12
DNase-seq
2
FAIRE-seq
Assay category
825
DNA binding
395
Transcription
148
DNA accessibility
62
DNA methylation
1
3D chromatin structure
Date released
78
May, 2022
27
February, 2021
September, 2018
10
November, 2018
9
August, 2017
8
October, 2017
7
August, 2020
5
September, 2017
3
September, 2020
1
March, 2019
Available data
478
bed narrowPeak
375
bam
336
bigWig
227
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
88
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
148
Homo sapiens
Biosample type
106
primary cell
41
tissue
1
in vitro differentiated cells
Organ
86
pancreas
57
epithelium
4
connective tissue
4
liver
3
adipose tissue
3
brain
2
spleen
Project
97
HPAP
51
AMP
Genome assembly (visualization)
49
hg19
39
GRCh38
Lab
97
Klaus Kaestner, Upenn
31
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
month_released!
September, 2018
BIOSAMPLE
ASSAY
148 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
32
pancreatic beta cell
19
pancreatic acinar cell
6
skeletal muscle myoblast
1
tissue
islet of Langerhans
20
1
1
body of pancreas
4
2
brain
2
liver
2
omental fat pad
1
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
Download