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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
432
ATAC-seq
202
DNase-seq
36
snATAC-seq
5
FAIRE-seq
Assay category
1708
DNA binding
1703
Transcription
675
DNA accessibility
45
DNA methylation
33
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
82
August, 2021
34
May, 2021
33
October, 2019
26
November, 2019
22
February, 2021
21
May, 2022
16
January, 2021
11
May, 2023
10
April, 2020
8
July, 2019
4
August, 2017
4
March, 2020
3
January, 2018
3
March, 2019
2
November, 2018
2
November, 2020
1
August, 2022
1
October, 2017
Available data
434
bed narrowPeak
330
bam
299
bigWig
207
bigBed narrowPeak
201
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
64
xls
14
tsv
12
bed bed3
7
bed bedgraph
5
fastq
4
txt
1
tar
Organism
674
Homo sapiens
Biosample type
434
tissue
168
primary cell
42
in vitro differentiated cells
31
cell line
Organ
163
kidney
77
heart
76
pancreas
58
vasculature
56
blood vessel
52
epithelium
49
artery
44
limb
36
brain
35
musculature of body
32
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
5
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
Project
636
AMP
29
T1D
10
LungMap
Genome assembly (visualization)
394
hg19
391
GRCh38
Lab
522
AMP-T2D consortium
81
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
46
inconsistent ontology term
2
audit script error
1
inconsistent replicate
files.run_type!
paired-ended
BIOSAMPLE
ASSAY
675 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
48
1
7
1
coronary artery
36
2
liver
20
heart
18
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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