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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 432ATAC-seq
  • 202DNase-seq
  • 36snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1708DNA binding
  • 1703Transcription
  • 675DNA accessibility
  • 45DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Date released
  • 187June, 2019
  • 105February, 2023
  • 100May, 2020
  • 82August, 2021
  • 34May, 2021
  • 33October, 2019
  • 26November, 2019
  • 22February, 2021
  • 21May, 2022
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 8July, 2019
  • 4August, 2017
  • 4March, 2020
  • 3January, 2018
  • 3March, 2019
  • 2November, 2018
  • 2November, 2020
  • 1August, 2022
  • 1October, 2017
Available data
  • 434bed narrowPeak
  • 330bam
  • 299bigWig
  • 207bigBed narrowPeak
  • 201bed bed3+
  • 196bed broadPeak
  • 196bigBed broadPeak
  • 64xls
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 5fastq
  • 4txt
  • 1tar
Organism
  • 674Homo sapiens
Biosample type
  • 434tissue
  • 168primary cell
  • 42in vitro differentiated cells
  • 31cell line
Organ
  • 163kidney
  • 77heart
  • 76pancreas
  • 58vasculature
  • 56blood vessel
  • 52epithelium
  • 49artery
  • 44limb
  • 36brain
  • 35musculature of body
  • 32eye
  • 30connective tissue
  • 25liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 5adipose tissue
  • 3nerve
  • 3vein
  • 1pituitary gland
  • 1skin of body
Project
  • 636AMP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 394hg19
  • 391GRCh38
Lab
  • 522AMP-T2D consortium
  • 81Katalin Susztak, Upenn
  • 34Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 46inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

675 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans48171
coronary artery362
liver20
heart18
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
macrophage11
peripheral blood mononuclear cell8
in vitro differentiated cells
neural progenitor cell10
adipocyte8
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
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