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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
11
snATAC-seq
10
DNase-seq
2
FAIRE-seq
Assay category
480
Transcription
253
DNA binding
175
DNA accessibility
51
DNA methylation
9
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2020
3
March, 2019
3
November, 2018
3
September, 2020
1
August, 2022
Available data
78
bam
77
bed narrowPeak
61
fastq
54
bigWig
39
zippedFastqFolder
34
bigBed narrowPeak
11
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
2
tsv
Organism
175
Homo sapiens
Biosample type
84
tissue
71
primary cell
20
cell line
Organ
172
pancreas
162
kidney
123
epithelium
73
heart
56
vasculature
54
blood vessel
48
artery
44
limb
35
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
105
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
82
hg19
70
GRCh38
Lab
83
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
lab.title!
Maike Sander, UCSD
month_released!
July, 2019
BIOSAMPLE
ASSAY
175 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
57
7
1
1
body of pancreas
4
4
pancreas
4
2
1
tibial nerve
1
2
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
Panc1
1
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