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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ATAC-seq
204
DNase-seq
5
FAIRE-seq
2
snATAC-seq
Assay category
1620
DNA binding
1399
Transcription
481
DNA accessibility
49
DNA methylation
26
3D chromatin structure
Date released
181
June, 2019
100
May, 2020
29
May, 2021
29
October, 2019
27
February, 2023
26
November, 2019
14
February, 2021
14
September, 2018
11
August, 2017
10
August, 2021
10
November, 2018
7
July, 2019
7
October, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
November, 2020
1
August, 2022
1
May, 2022
Available data
352
bam
306
bed narrowPeak
299
bigWig
233
bigBed narrowPeak
201
bed bed3+
198
bed broadPeak
198
bigBed broadPeak
45
fastq
14
tsv
12
bed bed3
4
bed bedgraph
1
tar
1
txt
Organism
481
Homo sapiens
Biosample type
243
tissue
182
primary cell
33
in vitro differentiated cells
23
cell line
Organ
82
kidney
80
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
artery
44
limb
37
brain
35
musculature of body
32
connective tissue
eye
18
ureter
12
bone element
12
skeleton
9
liver
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
481
AMP
Genome assembly (visualization)
357
hg19
300
GRCh38
Lab
481
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
2
audit script error
1
inconsistent replicate
organ_slims!
artery
eye
BIOSAMPLE
ASSAY
481 results
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Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
tissue
islet of Langerhans
33
1
1
1
heart
18
muscle of arm
17
brain
1
14
kidney
13
1
+ See 55 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 55 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
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