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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
14
DNase-seq
Assay category
200
Transcription
110
DNA accessibility
106
DNA binding
52
DNA methylation
4
3D chromatin structure
Date released
39
May, 2022
16
May, 2021
14
September, 2018
12
February, 2023
11
June, 2019
August, 2020
5
September, 2017
4
October, 2019
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
Available data
48
bed narrowPeak
39
bigWig
39
zippedFastqFolder
36
bam
34
bigBed narrowPeak
25
fastq
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
1
tsv
Organism
110
Homo sapiens
Biosample type
78
primary cell
20
cell line
12
tissue
Organ
166
pancreas
163
kidney
116
epithelium
77
heart
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
68
AMP
42
HPAP
Genome assembly (visualization)
45
hg19
39
GRCh38
Lab
68
AMP-T2D consortium
42
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
month_released!
August, 2020
organ_slims!
thymus
vasculature
BIOSAMPLE
ASSAY
110 results
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ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
30
pancreatic beta cell
21
pancreatic acinar cell
9
pancreatic ductal cell
4
kidney tubule cell
3
+ See 9 more…
cell line
EndoC_BH1
19
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
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