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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 428ATAC-seq
  • 212DNase-seq
  • 82snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1871DNA binding
  • 1824Transcription
  • 727DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 187June, 2019
  • February, 2023
  • 100May, 2020
  • 99May, 2022
  • 82August, 2021
  • 49February, 2021
  • 34May, 2021
  • 33October, 2019
  • 26November, 2019
  • 16January, 2021
  • 14September, 2018
  • 11August, 2017
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 427bed narrowPeak
  • 389bam
  • 347bigWig
  • 241bigBed narrowPeak
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 205bed bed3+
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 4bed bedgraph
  • 2bed bed3
  • 2tsv
  • 1tar
  • 1txt
Organism
  • 726Homo sapiens
Biosample type
  • 389tissue
  • 276primary cell
  • 31cell line
  • 31in vitro differentiated cells
Organ
  • 163kidney
  • 160pancreas
  • 111epithelium
  • 44limb
  • 42heart
  • 36brain
  • 35musculature of body
  • 29liver
  • 24connective tissue
  • 23vasculature
  • 21blood vessel
  • 18ureter
  • 14artery
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8bone element
  • 8skeleton
  • 7adipose tissue
  • 5eye
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 604AMP
  • 97HPAP
  • 16T1D
  • 10LungMap
Genome assembly (visualization)
  • 408hg19
  • 406GRCh38
Lab
  • 473AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 39Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 37inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

727 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans57151
liver202
heart18
muscle of arm17
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
in vitro differentiated cells
neural progenitor cell10
adipocyte71
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
embryonic stem cell5
cardiac precursors (cardiac muscle cell)1
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