Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
506
ATAC-seq
202
DNase-seq
84
snATAC-seq
4
FAIRE-seq
Assay category
1886
Transcription
1555
DNA binding
796
DNA accessibility
97
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
477
bed narrowPeak
374
bam
333
bigWig
229
bigBed narrowPeak
202
bed bed3+
201
bed broadPeak
199
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
795
Homo sapiens
Biosample type
448
tissue
281
primary cell
39
in vitro differentiated cells
28
cell line
Organ
169
pancreas
160
kidney
116
epithelium
77
heart
52
vasculature
50
blood vessel
46
artery
38
limb
36
brain
34
musculature of body
31
eye
30
connective tissue
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
blood
8
bodily fluid
6
adipose tissue
2
spleen
Project
660
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
432
hg19
427
GRCh38
Lab
526
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
January, 2018
October, 2018
October, 2019
BIOSAMPLE
ASSAY
796 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
55
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 58 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 55 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
HepG2
1
See all biosamples
Download