Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ATAC-seq
10
DNase-seq
3
FAIRE-seq
3
snATAC-seq
Assay category
479
Transcription
235
DNA binding
168
DNA accessibility
53
DNA methylation
11
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
January, 2021
7
August, 2020
7
October, 2019
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
3
November, 2018
3
September, 2020
1
August, 2022
Available data
78
bam
77
bed narrowPeak
61
fastq
54
bigWig
39
zippedFastqFolder
35
bigBed narrowPeak
11
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
2
tsv
1
tar
Organism
168
Homo sapiens
Biosample type
74
primary cell
74
tissue
20
cell line
Organ
165
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
106
AMP
49
HPAP
13
T1D
Genome assembly (visualization)
82
hg19
69
GRCh38
Lab
83
AMP-T2D consortium
49
Klaus Kaestner, Upenn
31
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
month_released!
January, 2021
organ_slims!
ovary
BIOSAMPLE
ASSAY
168 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
FAIRE-seq
snATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
endothelial cell of umbilical vein
2
1
tissue
islet of Langerhans
58
1
1
3
body of pancreas
4
4
pancreas
2
1
cell line
EndoC_BH1
19
Panc1
1
Download