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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
485
ATAC-seq
176
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1729
Transcription
1640
DNA binding
750
DNA accessibility
95
DNA methylation
29
3D chromatin structure
1
DNA sequencing
Date released
155
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
43
February, 2021
May, 2021
27
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
435
bed narrowPeak
331
bam
307
bigWig
205
bigBed narrowPeak
173
bed bed3+
171
bed broadPeak
170
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
749
Homo sapiens
Biosample type
422
tissue
275
primary cell
38
in vitro differentiated cells
15
cell line
Organ
163
kidney
153
pancreas
107
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
614
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
389
hg19
382
GRCh38
Lab
489
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
29
audit script error
29
inconsistent ontology term
1
inconsistent replicate
month_released!
March, 2019
May, 2021
organ_slims!
limb
nerve
BIOSAMPLE
ASSAY
750 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
64
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 48 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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