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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 431ATAC-seq
  • 212DNase-seq
  • 84snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1821DNA binding
  • 1728Transcription
  • 732DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 1DNA sequencing
Date released
  • 187June, 2019
  • 105February, 2023
  • May, 2020
  • 99May, 2022
  • 82August, 2021
  • 49February, 2021
  • 34May, 2021
  • 33October, 2019
  • 26November, 2019
  • 16January, 2021
  • 14September, 2018
  • 11August, 2017
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 492bed narrowPeak
  • 344bam
  • 305bigWig
  • 241bigBed narrowPeak
  • 209bed bed3+
  • 208bed broadPeak
  • 206bigBed broadPeak
  • 102fastq
  • 64xls
  • 60zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
Organism
  • 731Homo sapiens
Biosample type
  • 470tissue
  • 188primary cell
  • 43in vitro differentiated cells
  • 31cell line
Organ
  • 173pancreas
  • 163kidney
  • 123epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 35musculature of body
  • 34connective tissue
  • 32eye
  • 29liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 596AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 441GRCh38
  • 408hg19
Lab
  • 462AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 42inconsistent ontology term
  • 29audit script error
  • 1inconsistent replicate
month_released!
  • May, 2020
BIOSAMPLE
ASSAY

732 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
monocyte13
pancreatic acinar cell9
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
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