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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
452
ATAC-seq
190
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1678
Transcription
1672
DNA binding
731
DNA accessibility
96
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
167
June, 2019
100
May, 2020
99
May, 2022
82
August, 2021
70
February, 2023
41
February, 2021
May, 2021
30
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
October, 2017
7
August, 2020
7
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
412
bed narrowPeak
344
bam
321
bigWig
219
bigBed narrowPeak
187
bed bed3+
186
bed broadPeak
184
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
730
Homo sapiens
Biosample type
411
tissue
275
primary cell
38
in vitro differentiated cells
7
cell line
Organ
163
kidney
157
pancreas
107
epithelium
77
heart
58
vasculature
56
blood vessel
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
595
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
403
hg19
361
GRCh38
Lab
466
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
29
audit script error
1
inconsistent replicate
month_released!
May, 2021
organ_slims!
artery
ureter
BIOSAMPLE
ASSAY
731 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
liver
20
2
heart
18
retina
15
3
+ See 55 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
3
GM12878
1
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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