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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ATAC-seq
11
snATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
479
Transcription
205
DNA binding
166
DNA accessibility
49
DNA methylation
8
3D chromatin structure
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
13
February, 2023
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
June, 2019
4
March, 2019
4
March, 2020
October, 2019
November, 2018
3
September, 2020
1
August, 2022
Available data
71
bam
70
bed narrowPeak
58
fastq
47
bigWig
39
zippedFastqFolder
28
bigBed narrowPeak
6
bed broadPeak
4
bed bed3+
4
bigBed broadPeak
2
tsv
Organism
166
Homo sapiens
Biosample type
76
tissue
71
primary cell
19
cell line
Organ
166
pancreas
160
kidney
116
epithelium
77
heart
52
vasculature
50
blood vessel
46
artery
38
limb
35
musculature of body
34
brain
31
eye
30
connective tissue
25
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
6
adipose tissue
1
spleen
Project
96
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
75
hg19
64
GRCh38
Lab
73
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
1
audit script error
month_released!
November, 2018
October, 2019
BIOSAMPLE
ASSAY
166 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
55
7
1
1
body of pancreas
4
2
pancreas
4
2
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cell line
EndoC_BH1
19
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