Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
ATAC-seq
36
DNase-seq
11
snATAC-seq
1
FAIRE-seq
Assay category
645
Transcription
352
DNA binding
247
DNA accessibility
59
DNA methylation
12
3D chromatin structure
Date released
57
May, 2022
48
February, 2023
34
June, 2019
20
November, 2019
16
May, 2021
14
September, 2018
8
February, 2021
8
January, 2021
7
August, 2020
5
August, 2017
5
October, 2017
5
September, 2017
4
July, 2019
4
March, 2019
4
March, 2020
4
October, 2019
November, 2018
3
September, 2020
1
August, 2022
Available data
148
bed narrowPeak
114
bam
82
bigWig
59
bigBed narrowPeak
58
fastq
39
zippedFastqFolder
37
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
2
tsv
Organism
247
Homo sapiens
Biosample type
145
tissue
74
primary cell
28
cell line
Organ
170
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
35
brain
35
musculature of body
33
connective tissue
32
eye
26
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
7
adipose tissue
3
nerve
3
vein
1
pituitary gland
1
skin of body
1
spleen
Project
177
AMP
49
HPAP
21
T1D
Genome assembly (visualization)
142
GRCh38
115
hg19
Lab
154
AMP-T2D consortium
49
Klaus Kaestner, Upenn
39
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
20
inconsistent ontology term
1
audit script error
month_released!
November, 2018
organ_slims!
gonad
BIOSAMPLE
ASSAY
247 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
islet of Langerhans
58
1
7
1
coronary artery
36
2
heart
18
body of pancreas
4
2
pancreas
2
4
+ See 4 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
cardiac fibroblast
3
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
Panc1
1
See all biosamples
Download