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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ATAC-seq
29
snATAC-seq
Assay category
653
Transcription
127
DNA accessibility
8
DNA binding
6
DNA methylation
Date released
183
June, 2019
100
May, 2020
99
May, 2022
82
August, 2021
78
February, 2023
49
February, 2021
34
May, 2021
32
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
56
bed narrowPeak
27
fastq
18
bam
12
bed bed3
12
tsv
7
bed bedgraph
4
bed bed3+
4
bigWig
3
txt
Organism
127
Homo sapiens
Biosample type
62
tissue
40
primary cell
16
in vitro differentiated cells
9
cell line
Organ
43
artery
43
blood vessel
43
heart
43
vasculature
eye
15
connective tissue
13
pancreas
12
bone element
12
epithelium
12
skeleton
6
limb
1
adipose tissue
1
brain
1
liver
Project
87
AMP
27
HPAP
13
T1D
Genome assembly (visualization)
53
GRCh38
40
hg19
Lab
84
AMP-T2D consortium
27
Klaus Kaestner, Upenn
13
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
27
audit script error
9
inconsistent ontology term
1
inconsistent replicate
organ_slims!
eye
BIOSAMPLE
ASSAY
127 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
coronary artery
35
islet of Langerhans
11
2
acetabular part of hip bone
1
adipose tissue
1
brain
1
+ See 11 more…
primary cell
Langerhans cell
27
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
+ See 1 more…
in vitro differentiated cells
adipocyte
5
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
See all biosamples
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