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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ATAC-seq
2
snATAC-seq
Assay category
136
Transcription
123
DNA accessibility
35
DNA binding
10
3D chromatin structure
Date released
187
June, 2019
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
79
bed narrowPeak
21
bigWig
14
bam
14
bigBed narrowPeak
14
fastq
14
tsv
10
bed bed3
4
bed bed3+
3
bed bedgraph
3
txt
Organism
123
Homo sapiens
Biosample type
83
tissue
26
primary cell
12
in vitro differentiated cells
2
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
31
pancreas
28
epithelium
27
eye
10
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
Project
110
AMP
13
T1D
Genome assembly (visualization)
63
hg19
49
GRCh38
Lab
107
AMP-T2D consortium
13
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
coronary artery
35
islet of Langerhans
13
2
retina
15
pigmented layer of retina
12
acetabular part of hip bone
1
+ See 5 more…
primary cell
pancreatic beta cell
4
pancreatic ductal cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
+ See 3 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
+ See 2 more…
cell line
EndoC_BH1
2
See all biosamples
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