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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 428ATAC-seq
  • 193DNase-seq
  • 85snATAC-seq
  • 4FAIRE-seq
Assay category
  • 1742DNA binding
  • 1717Transcription
  • 710DNA accessibility
  • 44DNA methylation
  • 263D chromatin structure
  • 1DNA sequencing
Date released
  • 173June, 2019
  • 100May, 2020
  • 93February, 2023
  • 82August, 2021
  • 60May, 2022
  • 49February, 2021
  • 26October, 2019
  • 25November, 2019
  • 18May, 2021
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8August, 2017
  • 8July, 2019
  • 8October, 2017
  • 4March, 2019
  • 3January, 2018
  • 2March, 2020
  • 2November, 2020
  • 1August, 2022
  • 1July, 2025
Available data
  • 438bed narrowPeak
  • 347bam
  • 298bigWig
  • 201bigBed narrowPeak
  • 194bed bed3+
  • 192bed broadPeak
  • 190bigBed broadPeak
  • 70fastq
  • 64xls
  • 21zippedFastqFolder
  • 14tsv
  • 12bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tbi
Organism
  • 708Homo sapiens
Biosample type
  • 459tissue
  • 197primary cell
  • 43in vitro differentiated cells
  • 11cell line
Organ
  • 173pancreas
  • 163kidney
  • epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 36musculature of body
  • 34connective tissue
  • 32eye
  • 29liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 623AMP
  • 48HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 403hg19
  • 391GRCh38
Lab
  • 488AMP-T2D consortium
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 48Klaus Kaestner, Upenn
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
Audit category:
  • 29audit script error
  • 25inconsistent ontology term
  • 1inconsistent replicate
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

710 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
macrophage11
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
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