Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 508ATAC-seq
  • 206DNase-seq
  • 85snATAC-seq
  • 5FAIRE-seq
Assay category
  • 1725Transcription
  • 1319DNA binding
  • 804DNA accessibility
  • 90DNA methylation
  • 303D chromatin structure
Date released
  • 185June, 2019
  • 105February, 2023
  • 100May, 2020
  • 82August, 2021
  • 79May, 2022
  • 48February, 2021
  • 34May, 2021
  • 32October, 2019
  • 26November, 2019
  • 16January, 2021
  • 14September, 2018
  • 11May, 2023
  • 10April, 2020
  • 9August, 2017
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 7November, 2018
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 2November, 2020
  • 1August, 2022
  • 1July, 2025
Available data
  • 464bed narrowPeak
  • 381bam
  • 324bigWig
  • 235bigBed narrowPeak
  • 205bed bed3+
  • 203bed broadPeak
  • 201bigBed broadPeak
  • 98fastq
  • 64xls
  • 60zippedFastqFolder
  • 15tsv
  • 11bed bed3
  • 7bed bedgraph
  • 4txt
  • 1tar
  • 1tbi
Organism
  • 802Homo sapiens
Biosample type
  • 446tissue
  • 285primary cell
  • 43in vitro differentiated cells
  • 30cell line
Organ
  • 173pancreas
  • 163kidney
  • 123epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 36musculature of body
  • 34connective tissue
  • 32eye
  • liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 668AMP
  • 97HPAP
  • 29T1D
  • 10LungMap
Genome assembly (visualization)
  • 434GRCh38
  • 425hg19
Lab
  • 553AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 52Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 5Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
Audit category:
  • 45inconsistent ontology term
  • 29audit script error
organ_slims!
  • liver
BIOSAMPLE
ASSAY

804 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751361
islet of Langerhans68171
coronary artery362
heart18
retina153
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
chondrocyte5
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
Panc11
glomerular visceral epithelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego