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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
DNase-seq
24
ATAC-seq
1
snATAC-seq
Assay category
591
DNA binding
202
Transcription
82
DNA accessibility
13
DNA methylation
10
3D chromatin structure
1
DNA sequencing
Date released
53
June, 2019
21
May, 2022
3
November, 2018
2
August, 2017
1
February, 2021
1
January, 2018
1
October, 2019
Available data
79
bed narrowPeak
78
bigWig
59
bam
57
bed bed3+
57
bigBed narrowPeak
56
bed broadPeak
56
bigBed broadPeak
4
fastq
1
bed bed3
1
txt
Organism
82
Homo sapiens
Biosample type
77
tissue
4
primary cell
1
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
82
AMP
Genome assembly (visualization)
81
hg19
59
GRCh38
Lab
62
AMP-T2D consortium
20
Karen Mohlke, UNC
Audit category:
2
inconsistent ontology term
1
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ATAC-seq
snATAC-seq
tissue
liver
2
20
muscle of arm
17
muscle of leg
13
renal pelvis
10
left renal pelvis
4
+ See 5 more…
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
skeletal muscle cell
1
cell line
HepG2
1
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