Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 152ATAC-seq
  • 11snATAC-seq
  • 8DNase-seq
  • 2FAIRE-seq
Assay category
  • 479Transcription
  • 218DNA binding
  • 173DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Date released
  • 57May, 2022
  • 20November, 2019
  • 16May, 2021
  • 14September, 2018
  • 13February, 2023
  • 8January, 2021
  • 7August, 2020
  • 5August, 2017
  • 5October, 2017
  • 5September, 2017
  • 4June, 2019
  • 4March, 2019
  • 4March, 2020
  • 4October, 2019
  • 3November, 2018
  • 3September, 2020
  • 1August, 2022
Available data
  • 75bam
  • 74bed narrowPeak
  • 61fastq
  • 51bigWig
  • 39zippedFastqFolder
  • 32bigBed narrowPeak
  • 9bed broadPeak
  • 7bed bed3+
  • 7bigBed broadPeak
  • 2tsv
Organism
  • 173Homo sapiens
Biosample type
  • 82tissue
  • 71primary cell
  • 20cell line
Organ
  • 173pancreas
  • 163kidney
  • 123epithelium
  • 77heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 37brain
  • 35musculature of body
  • 34connective tissue
  • 32eye
  • 29liver
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 103AMP
  • 49HPAP
  • 21T1D
Genome assembly (visualization)
  • 79hg19
  • 67GRCh38
Lab
  • 80AMP-T2D consortium
  • 49Klaus Kaestner, Upenn
  • 39Kyle Gaulton, UCSD
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 19inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

173 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans58711
body of pancreas44
pancreas421
primary cell
pancreatic alpha cell35
pancreatic beta cell23
pancreatic acinar cell9
pancreatic ductal cell4
cell line
EndoC_BH119
Panc11
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego