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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 426ATAC-seq
  • 185DNase-seq
  • 79snATAC-seq
  • 2FAIRE-seq
Assay category
  • 1690DNA binding
  • 1628Transcription
  • 692DNA accessibility
  • 96DNA methylation
  • 253D chromatin structure
  • 1DNA sequencing
Date released
  • 164June, 2019
  • 98May, 2022
  • 71February, 2023
  • 70August, 2021
  • 55May, 2020
  • 48February, 2021
  • 30May, 2021
  • 28October, 2019
  • 25November, 2019
  • 14January, 2021
  • 14September, 2018
  • 11May, 2023
  • 10April, 2020
  • 10August, 2017
  • 8November, 2018
  • 7August, 2020
  • 7October, 2017
  • 6July, 2019
  • 5September, 2017
  • 3January, 2018
  • 3September, 2020
  • 2March, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 449bed narrowPeak
  • 303bam
  • 264bigWig
  • 210bigBed narrowPeak
  • 182bed broadPeak
  • 182bigBed broadPeak
  • 181bed bed3+
  • 97fastq
  • 64xls
  • 60zippedFastqFolder
  • 7bed bedgraph
  • 6bed bed3
  • 3txt
  • 1tar
  • 1tsv
Organism
  • 691Homo sapiens
Biosample type
  • 416tissue
  • 223primary cell
  • 31cell line
  • 22in vitro differentiated cells
Organ
  • 155kidney
  • 151pancreas
  • 119epithelium
  • 70heart
  • 58vasculature
  • 56blood vessel
  • 49artery
  • 44limb
  • 34musculature of body
  • 30eye
  • 28liver
  • 26brain
  • 22connective tissue
  • 18ureter
  • 10lung
  • 8bone element
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5adipose tissue
  • 3nerve
  • 3vein
  • 2spleen
  • 1pituitary gland
  • 1skin of body
Project
  • 571AMP
  • 97HPAP
  • 14T1D
  • 10LungMap
Genome assembly (visualization)
  • 401GRCh38
  • 354hg19
Lab
  • 448AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 81Katalin Susztak, Upenn
  • 33Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 34inconsistent ontology term
  • 28audit script error
  • 1inconsistent replicate
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

692 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney75116
islet of Langerhans5051
coronary artery362
liver201
muscle of arm17
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
Panc11
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
adipocyte41
chondrocyte5
embryonic stem cell2
Progenitor cell of Hypothalamus (neural progenitor cell)1
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