Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
426
ATAC-seq
185
DNase-seq
79
snATAC-seq
2
FAIRE-seq
Assay category
1690
DNA binding
1628
Transcription
692
DNA accessibility
96
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
164
June, 2019
98
May, 2022
71
February, 2023
70
August, 2021
55
May, 2020
48
February, 2021
30
May, 2021
28
October, 2019
25
November, 2019
14
January, 2021
14
September, 2018
11
May, 2023
10
April, 2020
10
August, 2017
8
November, 2018
7
August, 2020
7
October, 2017
6
July, 2019
5
September, 2017
3
January, 2018
3
September, 2020
2
March, 2020
2
November, 2020
1
August, 2022
Available data
449
bed narrowPeak
303
bam
264
bigWig
210
bigBed narrowPeak
182
bed broadPeak
182
bigBed broadPeak
181
bed bed3+
97
fastq
64
xls
60
zippedFastqFolder
7
bed bedgraph
6
bed bed3
3
txt
1
tar
1
tsv
Organism
691
Homo sapiens
Biosample type
416
tissue
223
primary cell
31
cell line
22
in vitro differentiated cells
Organ
155
kidney
151
pancreas
119
epithelium
70
heart
58
vasculature
56
blood vessel
49
artery
44
limb
34
musculature of body
30
eye
28
liver
26
brain
22
connective tissue
18
ureter
10
lung
8
bone element
8
skeleton
7
blood
7
bodily fluid
5
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
571
AMP
97
HPAP
14
T1D
10
LungMap
Genome assembly (visualization)
401
GRCh38
354
hg19
Lab
448
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
33
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
34
inconsistent ontology term
28
audit script error
1
inconsistent replicate
replication_type!
anisogenic
BIOSAMPLE
ASSAY
692 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
11
6
islet of Langerhans
50
5
1
coronary artery
36
2
liver
20
1
muscle of arm
17
+ See 49 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 29 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
adipocyte
4
1
chondrocyte
5
embryonic stem cell
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 4 more…
See all biosamples
Download