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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 441ATAC-seq
  • 190DNase-seq
  • 77snATAC-seq
  • 4FAIRE-seq
Assay category
  • 1861Transcription
  • 1297DNA binding
  • 712DNA accessibility
  • 70DNA methylation
  • 243D chromatin structure
  • 1DNA sequencing
Date released
  • 171June, 2019
  • 102February, 2023
  • 99May, 2022
  • 78August, 2021
  • 45May, 2020
  • 44February, 2021
  • 34May, 2021
  • 27October, 2019
  • 14September, 2018
  • 13January, 2021
  • 11May, 2023
  • 10April, 2020
  • 10November, 2018
  • 8August, 2017
  • 8July, 2019
  • 8October, 2017
  • 7August, 2020
  • 5September, 2017
  • 4March, 2019
  • 3January, 2018
  • 3November, 2019
  • 3September, 2020
  • 2March, 2020
  • 2November, 2020
  • 1August, 2022
Available data
  • 441bed narrowPeak
  • 340bam
  • 322bigWig
  • 218bigBed narrowPeak
  • 191bed bed3+
  • 188bed broadPeak
  • 186bigBed broadPeak
  • 100fastq
  • 64xls
  • 60zippedFastqFolder
  • 13tsv
  • 11bed bed3
  • 1txt
Organism
  • 711Homo sapiens
Biosample type
  • 443tissue
  • 214primary cell
  • 29in vitro differentiated cells
  • 26cell line
Organ
  • 152kidney
  • 148pancreas
  • 109epithelium
  • 75heart
  • 53blood vessel
  • 53vasculature
  • 49artery
  • 44limb
  • 35musculature of body
  • 32brain
  • 31eye
  • 28liver
  • 27connective tissue
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 9blood
  • 9bodily fluid
  • 8adipose tissue
  • 3nerve
  • 2spleen
  • 1pituitary gland
  • 1skin of body
  • 1vein
Project
  • 579AMP
  • 97HPAP
  • 26T1D
  • 10LungMap
Genome assembly (visualization)
  • 398hg19
  • 395GRCh38
Lab
  • 452AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 77Katalin Susztak, Upenn
  • 49Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 34inconsistent ontology term
  • 29audit script error
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

712 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney751321
islet of Langerhans49161
coronary artery362
liver202
heart18
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
monocyte15
pancreatic acinar cell9
in vitro differentiated cells
neural progenitor cell10
chondrocyte5
embryonic stem cell5
adipocyte4
immature adipocyte2
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
GM128781
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