Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ATAC-seq
49
DNase-seq
12
snATAC-seq
4
FAIRE-seq
Assay category
755
DNA binding
347
Transcription
260
DNA accessibility
28
DNA methylation
19
3D chromatin structure
Date released
100
May, 2020
39
June, 2019
37
February, 2023
24
November, 2019
16
August, 2021
11
October, 2019
6
February, 2021
5
January, 2021
4
August, 2017
4
March, 2019
4
March, 2020
4
May, 2021
2
July, 2019
2
November, 2018
1
May, 2022
1
October, 2017
Available data
135
bam
114
bigWig
94
bed narrowPeak
54
bigBed narrowPeak
46
bed bed3+
46
bed broadPeak
44
bigBed broadPeak
14
tsv
7
bed bed3
7
bed bedgraph
7
fastq
4
txt
1
tar
Organism
260
Homo sapiens
Biosample type
139
primary cell
81
tissue
35
in vitro differentiated cells
5
cell line
Organ
47
pancreas
19
connective tissue
19
kidney
18
epithelium
16
brain
9
heart
5
vasculature
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
eye
2
blood
2
bodily fluid
2
liver
2
vein
1
musculature of body
Project
242
AMP
18
T1D
Genome assembly (visualization)
154
hg19
86
GRCh38
Lab
224
AMP-T2D consortium
22
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
4
Katalin Susztak, Upenn
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
1
audit script error
1
inconsistent replicate
replication_type!
unreplicated
BIOSAMPLE
ASSAY
260 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
cardiac fibroblast
3
gabaergic neuron
3
+ See 46 more…
tissue
islet of Langerhans
37
1
3
kidney
2
4
1
heart
4
brain
1
2
frontal cortex
2
1
+ See 19 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
5
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 6 more…
cell line
EndoC_BH1
2
HepG2
1
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
Download