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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 195ATAC-seq
  • 49DNase-seq
  • 12snATAC-seq
  • 4FAIRE-seq
Assay category
  • 755DNA binding
  • 347Transcription
  • 260DNA accessibility
  • 28DNA methylation
  • 193D chromatin structure
Date released
  • 100May, 2020
  • 39June, 2019
  • 37February, 2023
  • 24November, 2019
  • 16August, 2021
  • 11October, 2019
  • 6February, 2021
  • 5January, 2021
  • 4August, 2017
  • 4March, 2019
  • 4March, 2020
  • 4May, 2021
  • 2July, 2019
  • 2November, 2018
  • 1May, 2022
  • 1October, 2017
Available data
  • 135bam
  • 114bigWig
  • 94bed narrowPeak
  • 54bigBed narrowPeak
  • 46bed bed3+
  • 46bed broadPeak
  • 44bigBed broadPeak
  • 14tsv
  • 7bed bed3
  • 7bed bedgraph
  • 7fastq
  • 4txt
  • 1tar
Organism
  • 260Homo sapiens
Biosample type
  • 139primary cell
  • 81tissue
  • 35in vitro differentiated cells
  • 5cell line
Organ
  • 47pancreas
  • 19connective tissue
  • 19kidney
  • 18epithelium
  • 16brain
  • 9heart
  • 5vasculature
  • 4bone element
  • 4skeleton
  • 3adipose tissue
  • 3blood vessel
  • 3eye
  • 2blood
  • 2bodily fluid
  • 2liver
  • 2vein
  • 1musculature of body
Project
  • 242AMP
  • 18T1D
Genome assembly (visualization)
  • 154hg19
  • 86GRCh38
Lab
  • 224AMP-T2D consortium
  • 22Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 24inconsistent ontology term
  • 1audit script error
  • 1inconsistent replicate
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

260 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
cardiac fibroblast3
gabaergic neuron3
tissue
islet of Langerhans3713
kidney241
heart4
brain12
frontal cortex21
in vitro differentiated cells
neural progenitor cell10
adipocyte81
embryonic stem cell5
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Progenitor cell of Hypothalamus (neural progenitor cell)1
cell line
EndoC_BH12
HepG21
Panc11
glomerular visceral epithelial cell1
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