Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 105ATAC-seq
  • 27DNase-seq
  • 5snATAC-seq
  • 3FAIRE-seq
Assay category
  • 290Transcription
  • 181DNA binding
  • 140DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Date released
  • 45May, 2020
  • 34February, 2023
  • 23June, 2019
  • 12August, 2021
  • 5October, 2019
  • 4March, 2019
  • 4May, 2021
  • 2January, 2021
  • 2July, 2019
  • 2March, 2020
  • 2November, 2018
  • 1August, 2017
  • 1February, 2021
  • 1May, 2022
  • 1November, 2019
  • 1October, 2017
Available data
  • 86bam
  • 86bigWig
  • 43bed narrowPeak
  • 31bigBed narrowPeak
  • 28bed bed3+
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 13tsv
  • 6bed bed3
  • 5fastq
  • 1txt
Organism
  • 140Homo sapiens
Biosample type
  • 65primary cell
  • 54tissue
  • 21in vitro differentiated cells
Organ
  • 22pancreas
  • 12connective tissue
  • 11brain
  • 8kidney
  • 7heart
  • 4bone element
  • 4epithelium
  • 4skeleton
  • 3adipose tissue
  • 2blood
  • 2bodily fluid
  • 2eye
  • 1liver
  • 1musculature of body
Project
  • 125AMP
  • 15T1D
Genome assembly (visualization)
  • 99hg19
  • 40GRCh38
Lab
  • 114AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 12inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

140 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
oligodendrocyte3
B cell2
tissue
islet of Langerhans1812
heart4
brain12
frontal cortex21
kidney21
in vitro differentiated cells
neural progenitor cell10
adipocyte4
embryonic stem cell4
immature adipocyte1
osteoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego