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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 90ATAC-seq
  • 22DNase-seq
  • 7snATAC-seq
  • 1FAIRE-seq
Assay category
  • 574DNA binding
  • 120DNA accessibility
  • 57Transcription
  • 27DNA methylation
  • 103D chromatin structure
Date released
  • 55May, 2020
  • 23November, 2019
  • 16June, 2019
  • 6October, 2019
  • 5February, 2021
  • 4August, 2021
  • 3August, 2017
  • 3February, 2023
  • 3January, 2021
  • 2March, 2020
Available data
  • 51bed narrowPeak
  • 49bam
  • 28bigWig
  • 23bigBed narrowPeak
  • 20bed broadPeak
  • 20bigBed broadPeak
  • 18bed bed3+
  • 7bed bedgraph
  • 3txt
  • 2fastq
  • 1bed bed3
  • 1tar
  • 1tsv
Organism
  • 120Homo sapiens
Biosample type
  • 74primary cell
  • 27tissue
  • 14in vitro differentiated cells
  • 5cell line
Organ
  • 25pancreas
  • 14epithelium
  • 11kidney
  • 7connective tissue
  • 5brain
  • 5vasculature
  • 3blood vessel
  • 2heart
  • 2vein
  • 1eye
  • 1liver
Project
  • 117AMP
  • 3T1D
Genome assembly (visualization)
  • 55hg19
  • 46GRCh38
Lab
  • 110AMP-T2D consortium
  • 4Katalin Susztak, Upenn
  • 3Kyle Gaulton, UCSD
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 12inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

120 results

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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
cardiac fibroblast2
endothelial cell of umbilical vein11
tissue
islet of Langerhans191
kidney4
pancreas2
middle frontal gyrus1
in vitro differentiated cells
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
Progenitor cell of Hypothalamus (neural progenitor cell)1
cardiac precursors (cardiac muscle cell)1
cardiomyocytes (cardiac muscle cell)1
cell line
EndoC_BH12
HepG21
Panc11
glomerular visceral epithelial cell1
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