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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ATAC-seq
163
DNase-seq
72
snATAC-seq
1
FAIRE-seq
Assay category
1571
Transcription
1116
DNA binding
572
DNA accessibility
69
DNA methylation
15
3D chromatin structure
1
DNA sequencing
Date released
148
June, 2019
98
May, 2022
68
February, 2023
66
August, 2021
43
February, 2021
30
May, 2021
22
October, 2019
14
September, 2018
11
January, 2021
11
May, 2023
10
April, 2020
8
November, 2018
7
August, 2017
7
August, 2020
7
October, 2017
6
July, 2019
5
September, 2017
3
January, 2018
3
September, 2020
2
November, 2019
2
November, 2020
1
August, 2022
Available data
398
bed narrowPeak
254
bam
236
bigWig
187
bigBed narrowPeak
163
bed bed3+
162
bed broadPeak
162
bigBed broadPeak
95
fastq
64
xls
60
zippedFastqFolder
5
bed bed3
Organism
571
Homo sapiens
Biosample type
389
tissue
149
primary cell
26
cell line
8
in vitro differentiated cells
Organ
144
kidney
126
pancreas
105
epithelium
68
heart
53
blood vessel
53
vasculature
49
artery
44
limb
34
musculature of body
29
eye
27
liver
21
brain
18
ureter
15
connective tissue
10
lung
8
bone element
8
skeleton
7
blood
7
bodily fluid
5
adipose tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
1
vein
Project
454
AMP
97
HPAP
11
T1D
10
LungMap
Genome assembly (visualization)
355
GRCh38
299
hg19
Lab
338
AMP-T2D consortium
97
Klaus Kaestner, Upenn
77
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
Audit category:
28
audit script error
22
inconsistent ontology term
BIOSAMPLE
ASSAY
572 results
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ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
11
2
coronary artery
36
2
islet of Langerhans
31
4
1
liver
20
1
muscle of arm
17
+ See 48 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
monocyte
13
pancreatic acinar cell
9
+ See 12 more…
cell line
EndoC_BH1
17
smooth muscle cell of the coronary artery
8
GM12878
1
in vitro differentiated cells
chondrocyte
5
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
embryonic stem cell
1
immature adipocyte
1
See all biosamples
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