Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 336ATAC-seq
  • 163DNase-seq
  • 72snATAC-seq
  • 1FAIRE-seq
Assay category
  • 1571Transcription
  • 1116DNA binding
  • 572DNA accessibility
  • 69DNA methylation
  • 153D chromatin structure
  • 1DNA sequencing
Date released
  • 148June, 2019
  • 98May, 2022
  • 68February, 2023
  • 66August, 2021
  • 43February, 2021
  • 30May, 2021
  • 22October, 2019
  • 14September, 2018
  • 11January, 2021
  • 11May, 2023
  • 10April, 2020
  • 8November, 2018
  • 7August, 2017
  • 7August, 2020
  • 7October, 2017
  • 6July, 2019
  • 5September, 2017
  • 3January, 2018
  • 3September, 2020
  • 2November, 2019
  • 2November, 2020
  • 1August, 2022
Available data
  • 398bed narrowPeak
  • 254bam
  • 236bigWig
  • 187bigBed narrowPeak
  • 163bed bed3+
  • 162bed broadPeak
  • 162bigBed broadPeak
  • 95fastq
  • 64xls
  • 60zippedFastqFolder
  • 5bed bed3
Organism
  • 571Homo sapiens
Biosample type
  • 389tissue
  • 149primary cell
  • 26cell line
  • 8in vitro differentiated cells
Organ
  • 144kidney
  • 126pancreas
  • 105epithelium
  • 68heart
  • 53blood vessel
  • 53vasculature
  • 49artery
  • 44limb
  • 34musculature of body
  • 29eye
  • 27liver
  • 21brain
  • 18ureter
  • 15connective tissue
  • 10lung
  • 8bone element
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5adipose tissue
  • 3nerve
  • 2spleen
  • 1pituitary gland
  • 1skin of body
  • 1vein
Project
  • 454AMP
  • 97HPAP
  • 11T1D
  • 10LungMap
Genome assembly (visualization)
  • 355GRCh38
  • 299hg19
Lab
  • 338AMP-T2D consortium
  • 97Klaus Kaestner, Upenn
  • 77Katalin Susztak, Upenn
  • 30Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Xin Sun, UCSD
Audit category:
  • 28audit script error
  • 22inconsistent ontology term
BIOSAMPLE
ASSAY

572 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney75112
coronary artery362
islet of Langerhans3141
liver201
muscle of arm17
primary cell
Langerhans cell48
pancreatic alpha cell35
pancreatic beta cell23
monocyte13
pancreatic acinar cell9
cell line
EndoC_BH117
smooth muscle cell of the coronary artery8
GM128781
in vitro differentiated cells
chondrocyte5
Pancreatic progenitors (progenitor cell of endocrine pancreas)1
embryonic stem cell1
immature adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego