Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
482
ChIP-seq
Assay category
482
DNA binding
115
Transcription
31
DNA accessibility
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
other context
2
other post-translational modification
Date released
313
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
463
bam
418
fastq
409
bigWig
390
bed narrowPeak
351
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
20
tagAlign
3
tar
Organism
482
Homo sapiens
Biosample type
904
tissue
482
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
376
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
480
AMP
2
T1D
Genome assembly (visualization)
405
hg19
344
GRCh38
Lab
464
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
target.investigated_as!
other context
BIOSAMPLE
ASSAY
482 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
376
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
+ See 4 more…
See all biosamples
Download