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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
346
ChIP-seq
Assay category
346
DNA binding
279
Transcription
DNA accessibility
15
DNA methylation
Target of assay
226
histone modification
225
histone
115
narrow histone mark
109
broad histone mark
73
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
231
bam
198
bigWig
181
fastq
159
bed narrowPeak
135
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
Organism
339
Homo sapiens
Biosample type
226
tissue
67
in vitro differentiated cells
53
primary cell
Organ
117
connective tissue
98
liver
94
pancreas
50
adipose tissue
26
epithelium
22
musculature of body
Project
346
AMP
Genome assembly (visualization)
200
hg19
170
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA accessibility
assay_slims!!
DNA accessibility
BIOSAMPLE
ASSAY
346 results
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Clear Filters
ChIP-seq
tissue
liver
98
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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