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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
Assay category
1213
Transcription
604
DNA binding
389
DNA accessibility
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
156
October, 2019
103
August, 2017
59
May, 2019
55
October, 2018
50
May, 2020
45
December, 2017
43
April, 2019
40
November, 2017
20
May, 2024
10
November, 2018
7
December, 2018
6
September, 2017
5
October, 2017
3
January, 2019
2
March, 2020
Available data
500
bam
362
bigWig
342
bed narrowPeak
175
fastq
173
bigBed narrowPeak
162
tagAlign
22
bed bed3+
15
bed broadPeak
1
tagAlign bed3+
Organism
601
Homo sapiens
Biosample type
604
tissue
465
cell line
157
primary cell
142
in vitro differentiated cells
2
stem cell
Organ
139
brain
130
liver
76
pancreas
66
heart
54
connective tissue
53
adipose tissue
37
blood vessel
37
vasculature
32
limb
19
nerve
17
kidney
16
spleen
14
artery
13
musculature of body
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
602
AMP
2
T1D
Genome assembly (visualization)
348
GRCh38
331
hg19
Lab
584
AMP-T2D consortium
20
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
DNA methylation
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
604 results
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Clear Filters
ChIP-seq
tissue
liver
123
islet of Langerhans
57
body of pancreas
24
heart left ventricle
20
left cardiac atrium
20
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