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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
568
ChIP-seq
Assay category
568
DNA binding
242
Transcription
78
DNA accessibility
DNA methylation
3
3D chromatin structure
Target of assay
332
transcription factor
120
histone modification
119
histone
113
control
82
recombinant protein
64
narrow histone mark
58
RNA binding protein
55
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
28
October, 2019
6
February, 2021
5
May, 2019
4
August, 2021
Available data
544
bam
452
fastq
443
bigWig
424
bed narrowPeak
373
bigBed narrowPeak
92
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
568
Homo sapiens
Biosample type
366
cell line
183
tissue
15
in vitro differentiated cells
4
primary cell
Organ
534
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
568
AMP
Genome assembly (visualization)
440
hg19
385
GRCh38
Lab
568
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA methylation
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
568 results
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Clear Filters
ChIP-seq
cell line
HepG2
360
smooth muscle cell of the coronary artery
6
tissue
liver
145
tibial artery
23
right lobe of liver
10
coronary artery
5
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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