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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1186
ChIP-seq
Assay category
Transcription
1186
DNA binding
677
DNA accessibility
96
DNA methylation
25
3D chromatin structure
Target of assay
865
histone modification
864
histone
439
narrow histone mark
425
broad histone mark
217
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
229
August, 2017
219
October, 2019
121
May, 2021
120
May, 2019
91
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
32
September, 2018
31
June, 2019
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
4
August, 2021
2
March, 2020
Available data
964
bam
862
bigWig
821
bed narrowPeak
434
bigBed narrowPeak
338
tagAlign
314
fastq
56
bed broadPeak
31
bed bed3+
21
bigBed broadPeak
1
tagAlign bed3+
Organism
1179
Homo sapiens
Biosample type
907
tissue
484
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
218
brain
187
pancreas
159
liver
128
heart
96
vasculature
93
blood vessel
92
epithelium
86
connective tissue
73
adipose tissue
66
limb
42
kidney
39
musculature of body
35
nerve
28
artery
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
1100
AMP
86
T1D
Genome assembly (visualization)
797
GRCh38
776
hg19
Lab
1029
AMP-T2D consortium
117
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
27
inconsistent ontology term
Audit category:
70
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
1186 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
+ See 103 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic endocrine cell
23
endothelial cell of umbilical vein
17
skeletal muscle myoblast
15
+ See 18 more…
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