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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
4
RRBS
Assay category
163
DNA accessibility
125
Transcription
22
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
histone modification
15
broad histone mark
15
narrow histone mark
12
control
10
transcription factor
7
recombinant protein
3
RNA binding protein
Date released
13
October, 2019
5
April, 2019
4
July, 2019
2
June, 2019
2
May, 2019
Available data
22
bam
9
bed narrowPeak
9
bigWig
4
bed bedMethyl
4
bigBed bedMethyl
2
bigBed narrowPeak
Organism
26
Homo sapiens
Biosample type
10
cell line
8
primary cell
8
tissue
Organ
456
liver
120
pancreas
89
epithelium
82
connective tissue
59
blood
59
bodily fluid
47
adipose tissue
47
heart
34
vasculature
33
brain
31
blood vessel
26
kidney
18
limb
16
spleen
14
artery
12
musculature of body
11
nerve
10
embryo
3
eye
2
vein
1
pericardium
Project
26
AMP
Genome assembly (visualization)
13
hg19
9
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
RRBS
cell line
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
primary cell
epithelial cell of proximal tubule
3
1
kidney epithelial cell
2
1
renal cortical epithelial cell
1
tissue
kidney
7
1
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