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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
10
RRBS
1
DNAme array
Assay category
281
Transcription
189
DNA accessibility
188
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
163
histone
163
histone modification
87
broad histone mark
76
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
Date released
122
May, 2021
31
June, 2019
22
October, 2019
9
July, 2019
5
May, 2019
4
August, 2021
3
August, 2017
3
November, 2017
Available data
189
bigWig
180
bed narrowPeak
172
bam
100
tagAlign
57
bigBed narrowPeak
25
fastq
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
3
bed bed3+
Organism
199
Homo sapiens
Biosample type
799
tissue
399
cell line
199
primary cell
195
in vitro differentiated cells
3
stem cell
Organ
139
epithelium
pancreas
18
kidney
18
vasculature
16
blood vessel
15
vein
13
connective tissue
11
musculature of body
6
heart
5
liver
4
brain
4
eye
Project
115
AMP
84
T1D
Genome assembly (visualization)
178
hg19
131
GRCh38
Lab
117
Kyle Gaulton, UCSD
82
AMP-T2D consortium
Audit category:
27
inconsistent ontology term
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.file_type!
bed broadPeak
organ_slims!
pancreas
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
RRBS
DNAme array
primary cell
monocyte
85
1
CD8-positive, alpha-beta T cell
33
endothelial cell of umbilical vein
15
epithelial cell of proximal tubule
10
1
skeletal muscle satellite cell
8
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