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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
27
WGBS
11
RRBS
Assay category
1227
Transcription
907
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
190
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
18
July, 2019
16
November, 2018
15
October, 2017
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
739
bam
631
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
233
fastq
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
1
tagAlign bed3+
Organism
938
Homo sapiens
Biosample type
945
tissue
485
cell line
337
primary cell
198
in vitro differentiated cells
stem cell
Organ
210
brain
160
liver
132
heart
123
pancreas
80
connective tissue
79
adipose tissue
75
blood vessel
75
vasculature
67
limb
35
nerve
34
musculature of body
28
artery
28
kidney
22
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pericardium
1
pituitary gland
Project
943
AMP
2
T1D
Genome assembly (visualization)
606
GRCh38
538
hg19
Lab
905
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
stem cell
BIOSAMPLE
ASSAY
945 results
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ChIP-seq
WGBS
RRBS
tissue
liver
145
3
1
islet of Langerhans
71
1
heart left ventricle
35
4
1
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
3
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