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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
2
small RNA-seq
Assay category
252
Transcription
207
DNA binding
76
DNA accessibility
1
3D chromatin structure
Target of assay
198
histone
198
histone modification
102
narrow histone mark
96
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
136
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
39
August, 2017
23
June, 2019
18
July, 2019
18
October, 2019
6
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
February, 2021
Available data
459
bam
459
bigWig
252
tsv
197
fastq
195
bed narrowPeak
98
tagAlign
56
bigBed narrowPeak
18
bed broadPeak
18
bigBed broadPeak
3
bed bed3+
Organism
459
Homo sapiens
Biosample type
1508
tissue
459
primary cell
450
cell line
247
in vitro differentiated cells
3
stem cell
Organ
176
epithelium
160
pancreas
24
connective tissue
18
kidney
16
vasculature
14
blood vessel
10
musculature of body
10
vein
9
brain
8
liver
7
heart
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
279
AMP
180
T1D
Genome assembly (visualization)
501
hg19
459
GRCh38
Lab
279
AMP-T2D consortium
180
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
459 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
84
53
pancreatic alpha cell
7
10
12
pancreatic beta cell
7
10
12
pancreatic ductal cell
13
4
10
pancreatic acinar cell
8
4
12
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