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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
246
total RNA-seq
187
single cell RNA-seq
1
small RNA-seq
Assay category
434
Transcription
287
DNA accessibility
269
DNA binding
DNA methylation
10
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
176
May, 2021
76
February, 2023
59
September, 2018
56
September, 2020
53
August, 2017
48
July, 2018
47
May, 2020
43
April, 2018
33
May, 2022
26
October, 2019
21
June, 2019
16
July, 2019
13
February, 2021
9
November, 2017
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
2
October, 2018
1
November, 2018
Available data
491
bigWig
482
bam
342
fastq
250
tsv
218
bed narrowPeak
100
tagAlign
52
zippedFastqFolder
49
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
5
bed bed3+
2
csv
Organism
703
Homo sapiens
Biosample type
2098
tissue
703
primary cell
599
cell line
336
in vitro differentiated cells
5
stem cell
Organ
255
epithelium
225
pancreas
27
connective tissue
25
vasculature
22
blood vessel
21
kidney
17
vein
12
brain
musculature of body
9
heart
9
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
346
AMP
180
T1D
177
HPAP
Genome assembly (visualization)
491
hg19
449
GRCh38
Lab
311
AMP-T2D consortium
215
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
Audit category:
28
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
DNA methylation
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
703 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
85
54
Langerhans cell
85
pancreatic alpha cell
13
52
12
pancreatic beta cell
13
21
12
exocrine cell
39
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