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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
187
single cell RNA-seq
2
small RNA-seq
Assay category
436
Transcription
260
DNA accessibility
258
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
176
May, 2021
76
February, 2023
59
September, 2018
56
September, 2020
48
July, 2018
47
May, 2020
43
April, 2018
40
August, 2017
33
May, 2022
31
June, 2019
24
October, 2019
18
July, 2019
13
February, 2021
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
2
October, 2018
1
November, 2018
Available data
501
bigWig
494
bam
342
fastq
252
tsv
226
bed narrowPeak
100
tagAlign
57
bigBed narrowPeak
52
zippedFastqFolder
21
bed broadPeak
bigBed broadPeak
5
bed bed3+
2
csv
Organism
694
Homo sapiens
Biosample type
2134
tissue
694
primary cell
541
cell line
in vitro differentiated cells
5
stem cell
Organ
249
epithelium
225
pancreas
27
connective tissue
21
kidney
19
vasculature
18
blood vessel
15
vein
12
musculature of body
9
heart
9
liver
6
brain
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
337
AMP
180
T1D
177
HPAP
Genome assembly (visualization)
480
hg19
441
GRCh38
Lab
302
AMP-T2D consortium
215
Kyle Gaulton, UCSD
177
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
694 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
monocyte
85
54
Langerhans cell
85
pancreatic alpha cell
13
52
12
pancreatic beta cell
13
21
12
exocrine cell
39
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