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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
972
total RNA-seq
907
ChIP-seq
167
single cell RNA-seq
16
small RNA-seq
Assay category
1155
Transcription
907
DNA binding
467
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
445
February, 2021
265
August, 2017
217
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
74
October, 2018
48
December, 2017
47
July, 2019
47
September, 2023
40
May, 2024
39
May, 2021
25
February, 2020
21
May, 2022
19
November, 2019
15
October, 2017
11
March, 2020
10
February, 2023
10
November, 2018
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
1
December, 2019
Available data
1645
bam
1532
bigWig
1050
tsv
595
bed narrowPeak
377
bigBed narrowPeak
323
fastq
238
tagAlign
txt
35
bed broadPeak
28
bed bed3+
6
csv
1
tagAlign bed3+
Organism
2055
Homo sapiens
Biosample type
2062
tissue
715
primary cell
599
cell line
336
in vitro differentiated cells
5
stem cell
Organ
531
connective tissue
472
adipose tissue
402
pancreas
329
liver
232
heart
230
brain
86
blood vessel
86
vasculature
80
kidney
73
limb
58
bone element
40
nerve
36
musculature of body
32
artery
21
eye
20
spleen
9
lung
4
gonad
4
ovary
2
epithelium
1
lymph node
1
pituitary gland
1
spinal cord
Project
1997
AMP
47
KPMP
9
LungMap
9
T1D
Genome assembly (visualization)
1508
GRCh38
1447
hg19
Lab
1936
AMP-T2D consortium
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
6
Kyle Gaulton, UCSD
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
txt
month_released!
January, 2018
BIOSAMPLE
ASSAY
2062 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
2
islet of Langerhans
286
71
6
liver
167
145
1
1
kidney
27
51
bone tissue
58
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