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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
Assay category
172
DNA accessibility
125
Transcription
94
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
61
transcription factor
31
histone
31
histone modification
control
16
narrow histone mark
15
broad histone mark
13
RNA binding protein
10
chromatin remodeller
7
recombinant protein
Date released
27
December, 2018
19
April, 2019
15
January, 2019
15
October, 2019
12
November, 2018
4
May, 2019
2
June, 2019
Available data
94
bam
93
bed narrowPeak
93
bigWig
78
bigBed narrowPeak
54
fastq
Organism
94
Homo sapiens
Biosample type
61
cell line
21
tissue
12
primary cell
Organ
444
liver
190
brain
170
pancreas
118
connective tissue
114
heart
102
epithelium
80
vasculature
78
blood vessel
54
blood
54
bodily fluid
49
adipose tissue
49
limb
40
kidney
33
musculature of body
25
artery
24
nerve
15
embryo
15
vein
12
spleen
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
94
AMP
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
94
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
1
inconsistent control
assay_title!
CRISPR genome editing followed by DNA sequencing
target.investigated_as!
control
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
cell line
GM12878
54
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
tissue
kidney
21
primary cell
epithelial cell of proximal tubule
8
kidney epithelial cell
4
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